No. words: 1696; after pruning: 1628


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:1108)  547  0.85 0.00 0.00  MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1      243   829 (0)  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   (0)   867   281 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1     1 
  389  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   721 
  393    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   393 
  409  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   701 
  413    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   413 
  421  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   689 
  433    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   433 
  445  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   665 
  461    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   461 
  489  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   621 
  493    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   493 
  521  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   589 
  525    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   525 
  557  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   553 
  561    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   561 
  581  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   529 
  622    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   622 
  626  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   484 
  642    MoSU035F_C03_BE422954As01P019A04P019A101F1_027.ab1   642 
  646  C MoSU035R_C03_BE422954As01P019A04P019A101R1_027.ab1   464 
Contig length: old 1109, new 1109

Contig length: old 1109, new 1109
New start: 0