No. words: 1681; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:1099)  542  0.86 0.00 0.00  MoSU035F_D03_BE422954As02P019A04P019A101F1_025.ab1      240   820 (0)  C MoSU035R_D03_BE422954As02P019A04P019A101R1_025.ab1   (0)   861   281 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    MoSU035F_D03_BE422954As02P019A04P019A101F1_025.ab1     1 
  466  C MoSU035R_D03_BE422954As02P019A04P019A101R1_025.ab1   635 
  470    MoSU035F_D03_BE422954As02P019A04P019A101F1_025.ab1   470 
  490  C MoSU035R_D03_BE422954As02P019A04P019A101R1_025.ab1   611 
  502    MoSU035F_D03_BE422954As02P019A04P019A101F1_025.ab1   502 
  534  C MoSU035R_D03_BE422954As02P019A04P019A101R1_025.ab1   567 
  550    MoSU035F_D03_BE422954As02P019A04P019A101F1_025.ab1   550 
  562  C MoSU035R_D03_BE422954As02P019A04P019A101R1_025.ab1   539 
Contig length: old 1100, new 1100

Contig length: old 1100, new 1100
New start: 0