No. words: 1745; after pruning: 1691


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:1239)  482  0.40 0.20 0.20  MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1      352   856 (0)  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   (0)   889   385 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1     1 
  516  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   725 
  531    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1   531 
  539  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   702 
  543    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1   543 
  583  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   658 
  587    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1   587 
  627  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   614 
  635    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1   635 
  639  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   602 
  703    MoSU035F_E03_BE422954At01P019A04P019A101F1_023.ab1   703 
  711  C MoSU035R_E03_BE422954At01P019A04P019A101R1_023.ab1   530 
Contig length: old 1240, new 1240

Contig length: old 1240, new 1240
New start: 0