No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.3 (1,1:437)  429  0.00 0.00 0.23  MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1        2   438 (11)  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   (154)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   590 
  226    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1    73 
  234  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   357 
  306    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   153 
  310  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   281 
  330    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   177 
  374  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   217 
  386    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   233 
  454  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   137 
  466    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   313 
  478  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1   113 
  486    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   333 
  494  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1    97 
  506    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   353 
  510  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1    81 
  546    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   393 
  554  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1    37 
  558    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   405 
  562  C MoSU008R_G07_BE424291Ld01P005E05E111R1_051.ab1    29 
  566    MoSU008F_G07_BE424291Ld01P005E05E111F1_051.ab1   413 
Contig length: old 601, new 602

Contig length: old 602, new 602
New start: 0