No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:435)  427  0.00 0.00 0.23  MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1        1   436 (152)  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   (164)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   599 
  196    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1    32 
  208  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   392 
  212    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1    48 
  220  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   380 
  284    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   120 
  300  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   300 
  316    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   152 
  320  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   280 
  340    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   176 
  344  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   256 
  372    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   208 
  380  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   220 
  396    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   232 
  436  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   164 
  440    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   276 
  468  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   132 
  476    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   312 
  488  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   112 
  492    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   328 
  500  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1   100 
  504    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   340 
  524  C MoSU008R_B08_BE424291Ld04P005E05E111R1_062.ab1    76 
  528    MoSU008F_B08_BE424291Ld04P005E05E111F1_062.ab1   364 
Contig length: old 751, new 752

Contig length: old 752, new 752
New start: 0