No. words: 1191; after pruning: 1165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:436)  429  0.00 0.00 0.23  MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1        1   437 (162)  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1   (156)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1   592 
  212    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1    56 
  220  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1   373 
  224    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1    68 
  240  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1   353 
  260    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1   104 
  504  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1    89 
  508    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1   352 
  528  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1    65 
  540    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1   384 
  564  C MoSU008R_E08_BE424291Ld07P005E05E111R1_056.ab1    29 
  568    MoSU008F_E08_BE424291Ld07P005E05E111F1_056.ab1   412 
Contig length: old 754, new 755

Contig length: old 755, new 755
New start: 0