No. words: 1198; after pruning: 1172


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:435)  427  0.00 0.00 0.23  MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1        1   436 (162)  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1   (165)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1   600 
  193    MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1    28 
  221  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1   380 
  237    MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1    72 
  245  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1   356 
  317    MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1   152 
  321  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1   280 
  341    MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1   176 
  517  C MoSU008R_H08_BE424291Ld10P005E05E111R1_050.ab1    84 
  529    MoSU008F_H08_BE424291Ld10P005E05E111F1_050.ab1   364 
Contig length: old 762, new 763

Contig length: old 763, new 763
New start: 0