No. words: 935; after pruning: 909


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -0.7 -0.7 (1,1:689)  152 11.07 0.00 0.00  MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1      350   593 (1)  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   (0)   341    98 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.7       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1     1 
  361  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   330 
  365    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1   365 
  376  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   315 
  380    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1   380 
  435  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   256 
  439    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1   439 
  447  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   244 
  451    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1   451 
  517  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   174 
  521    MoSU013F_F01_BE424976At02P015E02P015E081F1_005.ab1   521 
  566  C MoSU013R_F01_BE424976At02P015E02P015E081R1_005.ab1   125 
Contig length: old 690, new 690

Contig length: old 690, new 690
New start: 0 
S Change at: 406; seg lengths: entry 1, contig 1
S Change at: 546; seg lengths: entry 1, contig 1
S Change at: 584; seg lengths: entry 1, contig 1