No. words: 1227; after pruning: 1201


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:611)  556  0.00 0.00 0.17  MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1       30   613 (31)  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   (0)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1     1 
  241  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   372 
  257    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   257 
  293  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   320 
  337    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   337 
  345  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   268 
  361    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   361 
  417  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   196 
  429    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   429 
  477  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1   136 
  585    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   585 
  593  C MoSU009R_C03_BE426692As01P015D01P015D071R1_027.ab1    21 
  609    MoSU009F_C03_BE426692As01P015D01P015D071F1_027.ab1   609 
Contig length: old 644, new 644

Contig length: old 644, new 644
New start: 0