No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:615)  436  0.65 0.00 0.00  MoSU009F_F03_BE426692At02P015D01P015D071F1_021.ab1       31   492 (0)  C MoSU009R_F03_BE426692At02P015D01P015D071R1_021.ab1   (0)   586   125 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1    MoSU009F_F03_BE426692At02P015D01P015D071F1_021.ab1     1 
  253  C MoSU009R_F03_BE426692At02P015D01P015D071R1_021.ab1   364 
  257    MoSU009F_F03_BE426692At02P015D01P015D071F1_021.ab1   257 
  305  C MoSU009R_F03_BE426692At02P015D01P015D071R1_021.ab1   312 
  365    MoSU009F_F03_BE426692At02P015D01P015D071F1_021.ab1   365 
  373  C MoSU009R_F03_BE426692At02P015D01P015D071R1_021.ab1   244 
Contig length: old 616, new 616

Contig length: old 616, new 616
New start: 0