No. words: 1347; after pruning: 1321


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:637)  598  0.31 0.31 0.16  MoSU009F_D04_BE426692Ld06P015D01P015D071F1_026.ab1        1   638 (65)  C MoSU009R_D04_BE426692Ld06P015D01P015D071R1_026.ab1   (5)   639     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU009R_D04_BE426692Ld06P015D01P015D071R1_026.ab1   644 
   34    MoSU009F_D04_BE426692Ld06P015D01P015D071F1_026.ab1    27 
  225  C MoSU009R_D04_BE426692Ld06P015D01P015D071R1_026.ab1   420 
  638    MoSU009F_D04_BE426692Ld06P015D01P015D071F1_026.ab1   632 
Contig length: old 709, new 709

Contig length: old 709, new 710
New start: 0 
S Change at: 16; seg lengths: entry 1, contig 1
I Change at: 615; seg lengths: entry 1, contig 0