No. words: 1378; after pruning: 1352


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:624)  571  0.00 0.00 0.17  MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1       28   626 (154)  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   (0)   598     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1     1 
   68  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   558 
   72    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1    72 
   80  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   546 
   84    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1    84 
  100  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   526 
  108    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1   108 
  132  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   494 
  460    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1   460 
  504  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1   122 
  576    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1   576 
  584  C MoSU009R_F04_BE426692Ld08P015D01P015D071R1_022.ab1    42 
  615    MoSU009F_F04_BE426692Ld08P015D01P015D071F1_022.ab1   616 
Contig length: old 780, new 779

Contig length: old 779, new 780
New start: 0 
I Change at: 596; seg lengths: entry 1, contig 0