No. words: 1403; after pruning: 1377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:634)  586  0.16 0.32 0.16  MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1       13   636 (142)  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1   (0)   625     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1     1 
   27  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1   609 
   35    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1    35 
   87  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1   549 
   91    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1    91 
  119  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1   517 
  471    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1   471 
  511  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1   125 
  583    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1   583 
  598  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1    38 
  602    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1   602 
  610  C MoSU009R_G04_BE426692Ld09P015D01P015D071R1_020.ab1    27 
  626    MoSU009F_G04_BE426692Ld09P015D01P015D071F1_020.ab1   626 
Contig length: old 778, new 778

Contig length: old 778, new 780
New start: 0 
I Change at: 18; seg lengths: entry 1, contig 0
I Change at: 26; seg lengths: entry 1, contig 0