No. words: 1233; after pruning: 1207


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.9 (1,1:617)  570  0.00 0.00 0.17  MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1       24   619 (17)  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   (2)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1     1 
   27  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   592 
   31    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1    31 
   47  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   572 
   51    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1    51 
   83  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   536 
   87    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1    87 
   99  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   520 
  103    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   103 
  127  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   492 
  131    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   131 
  259  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   360 
  267    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   267 
  315  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   304 
  479    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   479 
  483  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1   136 
  547    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   547 
  551  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1    68 
  571    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   571 
  575  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1    44 
  591    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   591 
  601  C MoSU009R_A03_BE426692Tu01P015D01P015D071R1_031.ab1    19 
  613    MoSU009F_A03_BE426692Tu01P015D01P015D071F1_031.ab1   613 
Contig length: old 636, new 636

Contig length: old 636, new 636
New start: 0