No. words: 1228; after pruning: 1202


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.4 (1,1:626)  557  0.51 0.00 0.17  MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1       38   628 (8)  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   (2)   590     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1     1 
  321  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   307 
  329    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   329 
  345  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   283 
  349    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   349 
  381  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   247 
  393    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   393 
  453  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   175 
  461    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   461 
  485  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   143 
  513    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   513 
  517  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1   111 
  594    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   594 
  602  C MoSU009R_B03_BE426692Tu02P015D01P015D071R1_029.ab1    27 
  622    MoSU009F_B03_BE426692Tu02P015D01P015D071F1_029.ab1   622 
Contig length: old 636, new 636

Contig length: old 636, new 636
New start: 0