No. words: 1345; after pruning: 1319


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:913)  408  0.93 0.00 0.00  MoSU008F_C09_BE442619As01P005H05H111F1_075.ab1      179   609 (0)  C MoSU008R_C09_BE442619As01P005H05H111R1_075.ab1   (0)   736   306 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1    MoSU008F_C09_BE442619As01P005H05H111F1_075.ab1     1 
  386  C MoSU008R_C09_BE442619As01P005H05H111R1_075.ab1   529 
  390    MoSU008F_C09_BE442619As01P005H05H111F1_075.ab1   390 
  394  C MoSU008R_C09_BE442619As01P005H05H111R1_075.ab1   521 
  446    MoSU008F_C09_BE442619As01P005H05H111F1_075.ab1   446 
  450  C MoSU008R_C09_BE442619As01P005H05H111R1_075.ab1   465 
Contig length: old 914, new 914

Contig length: old 914, new 914
New start: 0