No. words: 1170; after pruning: 1144


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:926)  230  1.23 0.00 0.00  MoSU008F_E09_BE442619At01P005H05H111F1_071.ab1      264   506 (0)  C MoSU008R_E09_BE442619At01P005H05H111R1_071.ab1   (0)   664   422 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    MoSU008F_E09_BE442619At01P005H05H111F1_071.ab1     1 
  402  C MoSU008R_E09_BE442619At01P005H05H111R1_071.ab1   526 
  406    MoSU008F_E09_BE442619At01P005H05H111F1_071.ab1   406 
  410  C MoSU008R_E09_BE442619At01P005H05H111R1_071.ab1   518 
  414    MoSU008F_E09_BE442619At01P005H05H111F1_071.ab1   414 
  418  C MoSU008R_E09_BE442619At01P005H05H111R1_071.ab1   510 
  422    MoSU008F_E09_BE442619At01P005H05H111F1_071.ab1   422 
  426  C MoSU008R_E09_BE442619At01P005H05H111R1_071.ab1   502 
Contig length: old 927, new 927

Contig length: old 927, new 927
New start: 0