No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:920)  470  1.19 0.20 0.00  MoSU008F_F09_BE442619At02P005H05H111F1_069.ab1      221   726 (0)  C MoSU008R_F09_BE442619At02P005H05H111R1_069.ab1   (0)   702   196 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1    MoSU008F_F09_BE442619At02P005H05H111F1_069.ab1     1 
  490  C MoSU008R_F09_BE442619At02P005H05H111R1_069.ab1   433 
  502    MoSU008F_F09_BE442619At02P005H05H111F1_069.ab1   502 
  510  C MoSU008R_F09_BE442619At02P005H05H111R1_069.ab1   413 
  522    MoSU008F_F09_BE442619At02P005H05H111F1_069.ab1   522 
  526  C MoSU008R_F09_BE442619At02P005H05H111R1_069.ab1   397 
Contig length: old 921, new 922

Contig length: old 922, new 922
New start: 0