No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:638)  556  0.00 0.17 0.00  MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1        1   579 (0)  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   (10)   640    61 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   650 
   14    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1     4 
   31  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   619 
   35    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1    25 
   47  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   603 
   51    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1    41 
   55  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   595 
   63    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1    53 
   95  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   555 
   99    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1    89 
  207  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   443 
  211    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1   201 
  215  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   435 
  219    MoSU026F_H05_BE442619Ta16P005H05P030D061F1_033.ab1   209 
  223  C MoSU026R_H05_BE442619Ta16P005H05P030D061R1_033.ab1   427 
Contig length: old 650, new 649

Contig length: old 649, new 650
New start: 0 
I Change at: 27; seg lengths: entry 1, contig 0