No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.8 (1,1:471)  456  0.00 0.00 0.00  MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1        1   471 (53)  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1   (18)   472     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1   490 
   38    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1    20 
   42  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1   449 
   66    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1    48 
   74  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1   417 
  102    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1    84 
  358  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1   133 
  382    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1   364 
  414  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1    77 
  418    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1   400 
  430  C MoSU026R_G10_BE442619Ta17P030E05P005H111R1_068.ab1    61 
  442    MoSU026F_G10_BE442619Ta17P030E05P005H111F1_068.ab1   424 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0