No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.5 (1,1:482)  462  0.00 0.00 0.00  MoSU026F_C11_BE442619Ta21P030E05P005H111F1_091.ab1        5   481 (49)  C MoSU026R_C11_BE442619Ta21P030E05P005H111R1_091.ab1   (12)   479     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C MoSU026R_C11_BE442619Ta21P030E05P005H111R1_091.ab1   491 
   48    MoSU026F_C11_BE442619Ta21P030E05P005H111F1_091.ab1    40 
   56  C MoSU026R_C11_BE442619Ta21P030E05P005H111R1_091.ab1   436 
   72    MoSU026F_C11_BE442619Ta21P030E05P005H111F1_091.ab1    64 
   76  C MoSU026R_C11_BE442619Ta21P030E05P005H111R1_091.ab1   416 
  196    MoSU026F_C11_BE442619Ta21P030E05P005H111F1_091.ab1   188 
Contig length: old 538, new 538

Contig length: old 538, new 538
New start: 0