No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:487)  457  0.00 0.62 0.00  MoSU026F_D11_BE442619Ta22P030E05P005H111F1_089.ab1        3   487 (48)  C MoSU026R_D11_BE442619Ta22P030E05P005H111R1_089.ab1   (0)   488     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU026R_D11_BE442619Ta22P030E05P005H111R1_089.ab1   488 
   70    MoSU026F_D11_BE442619Ta22P030E05P005H111F1_089.ab1    69 
   74  C MoSU026R_D11_BE442619Ta22P030E05P005H111R1_089.ab1   415 
   98    MoSU026F_D11_BE442619Ta22P030E05P005H111F1_089.ab1    97 
  110  C MoSU026R_D11_BE442619Ta22P030E05P005H111R1_089.ab1   379 
  118    MoSU026F_D11_BE442619Ta22P030E05P005H111F1_089.ab1   117 
  138  C MoSU026R_D11_BE442619Ta22P030E05P005H111R1_089.ab1   351 
  186    MoSU026F_D11_BE442619Ta22P030E05P005H111F1_089.ab1   185 
Contig length: old 535, new 536

Contig length: old 536, new 536
New start: 0