No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:472)  452  0.42 0.00 0.00  MoSU026F_E11_BE442619Ta23P030E05P005H111F1_087.ab1        1   473 (51)  C MoSU026R_E11_BE442619Ta23P030E05P005H111R1_087.ab1   (18)   473     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C MoSU026R_E11_BE442619Ta23P030E05P005H111R1_087.ab1   491 
   38    MoSU026F_E11_BE442619Ta23P030E05P005H111F1_087.ab1    20 
   42  C MoSU026R_E11_BE442619Ta23P030E05P005H111R1_087.ab1   450 
   70    MoSU026F_E11_BE442619Ta23P030E05P005H111F1_087.ab1    52 
   74  C MoSU026R_E11_BE442619Ta23P030E05P005H111R1_087.ab1   418 
  120    MoSU026F_E11_BE442619Ta23P030E05P005H111F1_087.ab1   102 
  136  C MoSU026R_E11_BE442619Ta23P030E05P005H111R1_087.ab1   356 
  220    MoSU026F_E11_BE442619Ta23P030E05P005H111F1_087.ab1   202 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0