No. words: 1345; after pruning: 1319


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.6 (1,1:637)  607  0.00 0.16 0.16  MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1        1   636 (37)  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   (34)   638     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   672 
   88    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1    53 
  100  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   573 
  420    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   385 
  448  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   225 
  516    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   481 
  520  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   153 
  564    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   529 
  572  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1   101 
  592    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   557 
  596  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1    77 
  604    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   569 
  612  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1    61 
  616    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   581 
  624  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1    49 
  628    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   593 
  632  C MoSU026R_B04_BE442619Td02P005H05P030D061R1_030.ab1    41 
  640    MoSU026F_B04_BE442619Td02P005H05P030D061F1_030.ab1   605 
Contig length: old 707, new 708

Contig length: old 708, new 708
New start: 0