No. words: 1330; after pruning: 1304


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.4 (1,1:624)  595  0.00 0.00 0.16  MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1        5   625 (35)  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1   (50)   620     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1   670 
   86    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1    40 
  102  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1   569 
  514    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   468 
  522  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1   149 
  566    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   520 
  574  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1    97 
  578    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   532 
  582  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1    89 
  594    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   548 
  598  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1    73 
  606    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   560 
  610  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1    61 
  618    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   572 
  626  C MoSU026R_C04_BE442619Td03P005H05P030D061R1_028.ab1    45 
  638    MoSU026F_C04_BE442619Td03P005H05P030D061F1_028.ab1   592 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0