No. words: 1325; after pruning: 1299


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.6 (1,1:617)  560  1.30 0.00 0.33  MoSU026F_D04_BE442619Td04P005H05P030D061F1_026.ab1        5   619 (45)  C MoSU026R_D04_BE442619Td04P005H05P030D061R1_026.ab1   (48)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C MoSU026R_D04_BE442619Td04P005H05P030D061R1_026.ab1   661 
  340    MoSU026F_D04_BE442619Td04P005H05P030D061F1_026.ab1   296 
  344  C MoSU026R_D04_BE442619Td04P005H05P030D061R1_026.ab1   318 
  516    MoSU026F_D04_BE442619Td04P005H05P030D061F1_026.ab1   472 
  520  C MoSU026R_D04_BE442619Td04P005H05P030D061R1_026.ab1   142 
  544    MoSU026F_D04_BE442619Td04P005H05P030D061F1_026.ab1   500 
  552  C MoSU026R_D04_BE442619Td04P005H05P030D061R1_026.ab1   110 
  556    MoSU026F_D04_BE442619Td04P005H05P030D061F1_026.ab1   512 
Contig length: old 707, new 708

Contig length: old 708, new 708
New start: 0