No. words: 1111; after pruning: 1085


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:530)  507  0.00 0.19 0.00  MoSU005F_D07_BE442982As02P015C03C091F1_058.ab1        1   531 (31)  C MoSU005R_D07_BE442982As02P015C03C091R1_058.ab1   (17)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C MoSU005R_D07_BE442982As02P015C03C091R1_058.ab1   549 
   21    MoSU005F_D07_BE442982As02P015C03C091F1_058.ab1     4 
   25  C MoSU005R_D07_BE442982As02P015C03C091R1_058.ab1   525 
   33    MoSU005F_D07_BE442982As02P015C03C091F1_058.ab1    16 
   37  C MoSU005R_D07_BE442982As02P015C03C091R1_058.ab1   513 
   46    MoSU005F_D07_BE442982As02P015C03C091F1_058.ab1    28 
Contig length: old 580, new 580

Contig length: old 580, new 580
New start: 0