No. words: 1115; after pruning: 1089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:533)  512  0.00 0.00 0.00  MoSU005F_E07_BE442982At01P015C03C091F1_051.ab1        1   534 (34)  C MoSU005R_E07_BE442982At01P015C03C091R1_051.ab1   (13)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU005R_E07_BE442982At01P015C03C091R1_051.ab1   547 
   17    MoSU005F_E07_BE442982At01P015C03C091F1_051.ab1     4 
   21  C MoSU005R_E07_BE442982At01P015C03C091R1_051.ab1   527 
   33    MoSU005F_E07_BE442982At01P015C03C091F1_051.ab1    20 
   37  C MoSU005R_E07_BE442982At01P015C03C091R1_051.ab1   511 
   45    MoSU005F_E07_BE442982At01P015C03C091F1_051.ab1    32 
Contig length: old 581, new 581

Contig length: old 581, new 581
New start: 0