No. words: 1359; after pruning: 1333


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.1 (1,1:560)  492  1.26 0.36 0.54  MoSU005F_G07_BE442982Ld01P015C03C091F1_052.ab1        1   556 (115)  C MoSU005R_G07_BE442982Ld01P015C03C091R1_052.ab1   (127)   561     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU005R_G07_BE442982Ld01P015C03C091R1_052.ab1   688 
  157    MoSU005F_G07_BE442982Ld01P015C03C091F1_052.ab1    29 
Contig length: old 798, new 799

Contig length: old 799, new 799
New start: 0 
S Change at: 133; seg lengths: entry 1, contig 1
S Change at: 144; seg lengths: entry 1, contig 1