No. words: 1344; after pruning: 1318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.8 (1,1:549)  511  0.00 0.18 0.37  MoSU005F_B08_BE442982Ld04P015C03C091F1_061.ab1        1   545 (119)  C MoSU005R_B08_BE442982Ld04P015C03C091R1_061.ab1   (130)   550     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C MoSU005R_B08_BE442982Ld04P015C03C091R1_061.ab1   680 
  143    MoSU005F_B08_BE442982Ld04P015C03C091F1_061.ab1    13 
  151  C MoSU005R_B08_BE442982Ld04P015C03C091R1_061.ab1   530 
  155    MoSU005F_B08_BE442982Ld04P015C03C091F1_061.ab1    25 
  183  C MoSU005R_B08_BE442982Ld04P015C03C091R1_061.ab1   498 
  187    MoSU005F_B08_BE442982Ld04P015C03C091F1_061.ab1    57 
Contig length: old 794, new 794

Contig length: old 794, new 794
New start: 0