No. words: 1366; after pruning: 1340


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 5.3 (1,1:563)  480  2.52 0.18 0.36  MoSU005F_C08_BE442982Ld05P015C03C091F1_054.ab1        4   559 (118)  C MoSU005R_C08_BE442982Ld05P015C03C091R1_054.ab1   (128)   561     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C MoSU005R_C08_BE442982Ld05P015C03C091R1_054.ab1   689 
  137    MoSU005F_C08_BE442982Ld05P015C03C091F1_054.ab1    12 
  150  C MoSU005R_C08_BE442982Ld05P015C03C091R1_054.ab1   540 
  158    MoSU005F_C08_BE442982Ld05P015C03C091F1_054.ab1    33 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0 
S Change at: 133; seg lengths: entry 1, contig 1