No. words: 1005; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:441)  353  4.74 0.00 0.45  MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1        1   443 (121)  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   (0)   441     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1     1 
   20  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   422 
   36    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1    36 
   40  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   402 
   77    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1    78 
   81  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   361 
   93    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1    94 
  101  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   341 
  105    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   106 
  109  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   333 
  121    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   122 
  133  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   309 
  145    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   146 
  149  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   293 
  159    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   160 
  169  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   273 
  179    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   180 
  183  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   259 
  217    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   218 
  234  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   208 
  238    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   239 
  252  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   190 
  256    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   257 
  268  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   174 
  323    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   324 
  331  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   111 
  335    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   336 
  339  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1   103 
  343    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   344 
  347  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1    95 
  393    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   395 
  426  C MoSU005R_D08_BE442982Ld06P015C03C091R1_062.ab1    16 
  430    MoSU005F_D08_BE442982Ld06P015C03C091F1_062.ab1   432 
Contig length: old 564, new 562

Contig length: old 562, new 562
New start: 0 
S Change at: 16; seg lengths: entry 1, contig 1
S Change at: 32; seg lengths: entry 1, contig 1
S Change at: 200; seg lengths: entry 1, contig 1
S Change at: 209; seg lengths: entry 1, contig 1
S Change at: 278; seg lengths: entry 1, contig 1
S Change at: 388; seg lengths: entry 2, contig 2
S Change at: 411; seg lengths: entry 1, contig 1