No. words: 1365; after pruning: 1339


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.7 (1,1:563)  528  0.00 0.00 0.36  MoSU005F_G08_BE442982Ld09P015C03C091F1_056.ab1        2   559 (117)  C MoSU005R_G08_BE442982Ld09P015C03C091R1_056.ab1   (127)   562     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C MoSU005R_G08_BE442982Ld09P015C03C091R1_056.ab1   689 
  131    MoSU005F_G08_BE442982Ld09P015C03C091F1_056.ab1     5 
  139  C MoSU005R_G08_BE442982Ld09P015C03C091R1_056.ab1   551 
  143    MoSU005F_G08_BE442982Ld09P015C03C091F1_056.ab1    17 
  151  C MoSU005R_G08_BE442982Ld09P015C03C091R1_056.ab1   539 
  159    MoSU005F_G08_BE442982Ld09P015C03C091F1_056.ab1    33 
  295  C MoSU005R_G08_BE442982Ld09P015C03C091R1_056.ab1   395 
  299    MoSU005F_G08_BE442982Ld09P015C03C091F1_056.ab1   173 
Contig length: old 801, new 802

Contig length: old 802, new 802
New start: 0