No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:513)  486  0.19 0.19 0.00  MoSU005F_H08_BE442982Ld10P015C03C091F1_064.ab1        1   514 (155)  C MoSU005R_H08_BE442982Ld10P015C03C091R1_064.ab1   (129)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU005R_H08_BE442982Ld10P015C03C091R1_064.ab1   644 
  133    MoSU005F_H08_BE442982Ld10P015C03C091F1_064.ab1     4 
  137  C MoSU005R_H08_BE442982Ld10P015C03C091R1_064.ab1   508 
  163    MoSU005F_H08_BE442982Ld10P015C03C091F1_064.ab1    33 
  175  C MoSU005R_H08_BE442982Ld10P015C03C091R1_064.ab1   470 
  191    MoSU005F_H08_BE442982Ld10P015C03C091F1_064.ab1    61 
  243  C MoSU005R_H08_BE442982Ld10P015C03C091R1_064.ab1   402 
  247    MoSU005F_H08_BE442982Ld10P015C03C091F1_064.ab1   117 
Contig length: old 799, new 799

Contig length: old 799, new 799
New start: 0