No. words: 1125; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.6 (1,1:547)  515  0.00 0.00 0.37  MoSU005F_B07_BE442982Tu02P015C03C091F1_057.ab1        1   545 (13)  C MoSU005R_B07_BE442982Tu02P015C03C091R1_057.ab1   (20)   547     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU005R_B07_BE442982Tu02P015C03C091R1_057.ab1   567 
   49    MoSU005F_B07_BE442982Tu02P015C03C091F1_057.ab1    29 
   73  C MoSU005R_B07_BE442982Tu02P015C03C091R1_057.ab1   495 
   85    MoSU005F_B07_BE442982Tu02P015C03C091F1_057.ab1    65 
  181  C MoSU005R_B07_BE442982Tu02P015C03C091R1_057.ab1   387 
  189    MoSU005F_B07_BE442982Tu02P015C03C091F1_057.ab1   169 
  201  C MoSU005R_B07_BE442982Tu02P015C03C091R1_057.ab1   367 
  205    MoSU005F_B07_BE442982Tu02P015C03C091F1_057.ab1   185 
Contig length: old 577, new 578

Contig length: old 578, new 578
New start: 0