No. words: 840; after pruning: 814


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:529)  265  0.37 0.00 0.37  MoSU007F_C11_BE443312At01P015H05H111F1_091.ab1        1   273 (0)  C MoSU007R_C11_BE443312At01P015H05H111R1_091.ab1   (38)   529   258 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1  C MoSU007R_C11_BE443312At01P015H05H111R1_091.ab1   567 
  160    MoSU007F_C11_BE443312At01P015H05H111F1_091.ab1   122 
  192  C MoSU007R_C11_BE443312At01P015H05H111R1_091.ab1   376 
  200    MoSU007F_C11_BE443312At01P015H05H111F1_091.ab1   162 
  204  C MoSU007R_C11_BE443312At01P015H05H111R1_091.ab1   364 
  216    MoSU007F_C11_BE443312At01P015H05H111F1_091.ab1   178 
  220  C MoSU007R_C11_BE443312At01P015H05H111R1_091.ab1   348 
Contig length: old 567, new 567

Contig length: old 567, new 567
New start: 0