No. words: 664; after pruning: 638


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   28   -2.8 -2.8 (1,1:493)   67  6.02 0.00 0.00  MoSU007F_D11_BE443312At02P015H05H111F1_089.ab1       29   111 (0)  C MoSU007R_D11_BE443312At02P015H05H111R1_089.ab1   (87)   466   384 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.8       1        0

Gap   # merges  # failures
 size
28       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1  C MoSU007R_D11_BE443312At02P015H05H111R1_089.ab1   553 
Contig length: old 553, new 553

Contig length: old 553, new 553
New start: 0