No. words: 1556; after pruning: 1530


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:888)  645  0.30 0.15 0.15  MoSU003F_H07_BE443312Ld02P005H03H091F1_060.ab1       71   737 (0)  C MoSU003R_H07_BE443312Ld02P005H03H091R1_060.ab1   (0)   819   153 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    MoSU003F_H07_BE443312Ld02P005H03H091F1_060.ab1     1 
  420  C MoSU003R_H07_BE443312Ld02P005H03H091R1_060.ab1   470 
  428    MoSU003F_H07_BE443312Ld02P005H03H091F1_060.ab1   428 
  464  C MoSU003R_H07_BE443312Ld02P005H03H091R1_060.ab1   426 
  468    MoSU003F_H07_BE443312Ld02P005H03H091F1_060.ab1   468 
  484  C MoSU003R_H07_BE443312Ld02P005H03H091R1_060.ab1   406 
  500    MoSU003F_H07_BE443312Ld02P005H03H091F1_060.ab1   500 
  520  C MoSU003R_H07_BE443312Ld02P005H03H091R1_060.ab1   370 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0