No. words: 1617; after pruning: 1591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:875)  701  0.54 0.27 0.27  MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1        1   738 (0)  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   (4)   875   138 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1     1 
  381  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   495 
  385    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   385 
  397  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   479 
  401    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   401 
  413  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   463 
  417    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   417 
  425  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   451 
  429    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   429 
  441  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   435 
  445    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   445 
  453  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   423 
  457    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   457 
  461  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   415 
  473    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   473 
  481  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   395 
  517    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   517 
  521  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   355 
  549    MoSU003F_A08_BE443312Ld03P005H03H091F1_053.ab1   549 
  553  C MoSU003R_A08_BE443312Ld03P005H03H091R1_053.ab1   323 
Contig length: old 879, new 875

Contig length: old 875, new 875
New start: 0