No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.0 (1,1:554)  546  0.00 0.00 0.18  MoSU007F_A12_BE443312Ld04P015H05H111F1_096.ab1        3   555 (156)  C MoSU007R_A12_BE443312Ld04P015H05H111R1_096.ab1   (153)   552     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU007R_A12_BE443312Ld04P015H05H111R1_096.ab1   705 
  181    MoSU007F_A12_BE443312Ld04P015H05H111F1_096.ab1    30 
  241  C MoSU007R_A12_BE443312Ld04P015H05H111R1_096.ab1   465 
  249    MoSU007F_A12_BE443312Ld04P015H05H111F1_096.ab1    98 
  253  C MoSU007R_A12_BE443312Ld04P015H05H111R1_096.ab1   453 
  257    MoSU007F_A12_BE443312Ld04P015H05H111F1_096.ab1   106 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0