No. words: 1316; after pruning: 1290


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.6 (1,1:564)  555  0.00 0.18 0.00  MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1        5   565 (77)  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   (112)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   674 
  201    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1    92 
  205  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   470 
  217    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   108 
  221  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   454 
  225    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   116 
  281  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   394 
  289    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   180 
  389  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   286 
  397    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   288 
  501  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   174 
  505    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   396 
  529  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   146 
  533    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   424 
  541  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1   134 
  549    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   440 
  585  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1    90 
  589    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   480 
  605  C MoSU007R_B12_BE443312Ld05P015H05H111R1_094.ab1    70 
  617    MoSU007F_B12_BE443312Ld05P015H05H111F1_094.ab1   508 
Contig length: old 751, new 751

Contig length: old 751, new 751
New start: 0