No. words: 1414; after pruning: 1388


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:552)  548  0.18 0.00 0.00  MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1        1   553 (155)  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   (153)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   706 
  173    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1    20 
  177  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   530 
  246    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1    93 
  254  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   453 
  258    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1   105 
  310  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   397 
  318    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1   165 
  558  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1   149 
  586    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1   433 
  638  C MoSU007R_C12_BE443312Ld06P015H05H111R1_092.ab1    69 
  646    MoSU007F_C12_BE443312Ld06P015H05H111F1_092.ab1   493 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0