No. words: 1610; after pruning: 1584


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:888)  698  0.55 0.00 0.14  MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1       16   737 (0)  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   (0)   873   153 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1     1 
   19  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   870 
   23    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1    23 
  381  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   509 
  385    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   385 
  397  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   493 
  401    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   401 
  421  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   469 
  425    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   425 
  441  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   449 
  445    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   445 
  485  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   405 
  505    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   505 
  513  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   377 
  533    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   533 
  537  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   353 
  553    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   553 
  557  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   333 
  601    MoSU003F_E08_BE443312Ld07P005H03H091F1_055.ab1   601 
  605  C MoSU003R_E08_BE443312Ld07P005H03H091R1_055.ab1   285 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0