No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:551)  550  0.00 0.00 0.00  MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1        1   552 (159)  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   (153)   552     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   705 
  177    MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1    24 
  193  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   513 
  213    MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1    60 
  233  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   473 
  245    MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1    92 
  253  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   453 
  257    MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1   104 
  313  C MoSU007R_E12_BE443312Ld08P015H05H111R1_088.ab1   393 
  317    MoSU007F_E12_BE443312Ld08P015H05H111F1_088.ab1   164 
Contig length: old 864, new 864

Contig length: old 864, new 864
New start: 0