No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.2 (1,1:561)  552  0.00 0.00 0.18  MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1        3   561 (154)  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1   (142)   559     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1   701 
  162    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1    22 
  202  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1   500 
  222    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1    82 
  242  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1   460 
  246    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1   106 
  630  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1    72 
  634    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1   494 
  650  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1    52 
  654    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1   514 
  658  C MoSU007R_F12_BE443312Ld09P015H05H111R1_086.ab1    44 
  666    MoSU007F_F12_BE443312Ld09P015H05H111F1_086.ab1   526 
Contig length: old 854, new 855

Contig length: old 855, new 855
New start: 0