No. words: 1392; after pruning: 1366


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.8 (1,1:656)  634  0.61 0.00 0.15  MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1        2   657 (48)  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   (32)   655     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   687 
   50    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1    19 
  380  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   308 
  388    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   357 
  408  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   280 
  416    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   385 
  456  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   232 
  536    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   505 
  540  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   148 
  548    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   517 
  552  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   136 
  580    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   549 
  584  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1   104 
  648    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   617 
  652  C MoSU018R_B07_BE443312Ta12P005H03P023D091R1_061.ab1    36 
  676    MoSU018F_B07_BE443312Ta12P005H03P023D091F1_061.ab1   645 
Contig length: old 735, new 736

Contig length: old 736, new 736
New start: 0 
S Change at: 37; seg lengths: entry 1, contig 1
S Change at: 45; seg lengths: entry 2, contig 2