No. words: 1299; after pruning: 1273


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:675)  557  0.35 0.17 0.00  MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1        1   573 (0)  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   (49)   677   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   726 
   69    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1    19 
   77  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   650 
   97    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1    47 
  137  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   590 
  141    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1    91 
  153  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   574 
  157    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   107 
  165  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   562 
  169    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   119 
  201  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   526 
  209    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   159 
  297  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   430 
  309    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   259 
  329  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   398 
  353    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   303 
  381  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   346 
  389    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   339 
  417  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   310 
  437    MoSU018F_B03_BE443312Ta18P023A08P005H091F1_029.ab1   387 
  441  C MoSU018R_B03_BE443312Ta18P023A08P005H091R1_029.ab1   286 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0