No. words: 1233; after pruning: 1207


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:662)  534  0.36 0.00 0.18  MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1      116   664 (21)  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   (0)   548     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1     1 
  352  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   312 
  360    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1   360 
  384  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   280 
  400    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1   400 
  424  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   240 
  500    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1   500 
  504  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   160 
  532    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1   532 
  536  C MoSU018R_B08_BE443312Ta20P005H03P023D091R1_062.ab1   128 
  652    MoSU018F_B08_BE443312Ta20P005H03P023D091F1_062.ab1   652 
Contig length: old 685, new 685

Contig length: old 685, new 685
New start: 0