No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:683)  572  0.00 0.00 0.00  MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1        1   579 (0)  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   (59)   684   106 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   743 
   99    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1    40 
  163  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   581 
  167    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   108 
  303  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   441 
  307    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   248 
  467  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   277 
  471    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   412 
  487  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   257 
  491    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   432 
  495  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   249 
  511    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   452 
  515  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   229 
  531    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   472 
  535  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   209 
  555    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   496 
  559  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   185 
  571    MoSU018F_D03_BE443312Ta20P023A08P005H091F1_025.ab1   512 
  575  C MoSU018R_D03_BE443312Ta20P023A08P005H091R1_025.ab1   169 
Contig length: old 743, new 743

Contig length: old 743, new 743
New start: 0