No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:702)  578  0.17 0.17 0.17  MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1        4   599 (0)  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   (41)   699   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   740 
   59    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1    21 
   63  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   678 
   67    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1    29 
   71  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   670 
   99    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1    61 
  107  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   634 
  115    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1    77 
  147  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   594 
  159    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   121 
  195  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   546 
  203    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   165 
  299  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   442 
  311    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   273 
  467  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   274 
  471    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   433 
  479  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   262 
  483    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   445 
  487  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   254 
  507    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   469 
  515  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   226 
  531    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   493 
  535  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   206 
  539    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   501 
  543  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   198 
  571    MoSU018F_E03_BE443312Ta21P023A08P005H091F1_023.ab1   533 
  583  C MoSU018R_E03_BE443312Ta21P023A08P005H091R1_023.ab1   158 
Contig length: old 740, new 740

Contig length: old 740, new 740
New start: 0